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February 18, 2016 В· Read 3 min
In multidisciplinary research, I fulfill a problem that I've encountered is the program code . Specifically to find or replicate what is used in academic magazines. Whether I want to calculate holograms, a video file, image process, image process, or control of an instrument wants to edit an instrument that includes code . There are several ways to select the code;
What we do is pretty niche, so # 2 is usually the question. # 1 and # 2 are also problematic because they generally get what I call a 'black box' - they throw data on one side and out on an answer, but they have no idea what happens in the box. This can lead to all sorts of problems as it is simply unknown what happens in the Black Box.
# 3 works fine; LabVIEW and MATLAB have beautiful user stores that can be useful. The problem here is that you need to trust the code completely to test it and check if it's right it's right. Understanding and reviewing the code of another, the code of another can take as long as you write your own, so you can go down in some ways just below # 4.
After selecting the path no. 4 for speed, and so you can understand the exact data workflow that you encounter the opaqueity of academic papers. Maybe this is just my view, but the intellectual step from a mathematical description of an analysis process in a paper to actually encode it in a programming language can be huge.
, for example, take some of my doctoral thesis. I did not want to model the forces in an optical tweezette (not so no). There are many papers that describe the mathematical frame for such a problem perfectly, but I struggled to
18 Months, which translate this into the matlab code. I came to the end, and you could argue that I have learned a lot, but it was really inefficient. It slows down science!
This inefficiency is cooking for a problem that I am very confronted and am guilty of me, "custom written code".
I put my hands up, I'm guilty of this exact thing that worsens me so much!
I read forever papers with "with custom written codes", which are buried in the supplementary info, and I find it strange that this is hidden. Science should be a joint persecution, no competitive sport in which we discarded a method in faith that we will keep our competitive advantage.
I can not change anything to change the system in size to suit my needs to understand the analysis that I have to use and thus need to write code, but I can help by using the code used to use have. So this is what I will try to publish bits of the code on this blog. Maybe this will stop a new doctoral student somewhere by pulling their hair by trying to translate a darker piece of math into a mirrorable analysis program.
Also, by 'Open Sourcing' you would hope that as a community, we can improve the speed, precision and efficiency of a particularly annoying programming code.